rs238418136 SNP Detail

Summary

• ID
  rs238418136
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:88824132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGAGCAAC GCGCCTAGCA
  CCCAGCGCGT CCCGGCCATC GGCTCCGGAG GCGGCGCGGG GCCTGGAGGT GGCCGCTGTG
  GCGCGAGCGG AGGGGAAGTG GAATCCAGGG CGGGGGAGGG GGCACCGGGC ACATGCGCCG
  CGCGCACCCG GGGCTGAGAC GAGGCTCGGA GGCGGAGGTG AGCGAGCGGC CCCGCCCAGG
  M
  TCCGCCCTCG GGGCGGGGCT TTCCCGCCGG TAAGGGTGTG GGTGGGGTGA CCTGAGCGCC
  TCCAGAGTGG AAGTTGTCCC AGGCTCTCCT GCTCAGGTTA GAGCTGAGGT CTGCGGGTCA
  CCGAGGCCCG GCGAAGTTTC CGGAAGGAAT GGGTTACCTA GCTCTAAAAC GTTTTGGGAC
  GACGCTGAGG GGGCGTTGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365796651	MGP_WTSI_5_89105298	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238418136					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365796651	MGP_WTSI_5_89105298	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88824132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16030	CpG island 16030	within coordinates
Gm71600	predicted gene, 71600	within coordinates
Grsf1	G-rich RNA sequence binding factor 1	102 bp upstream
Rr378262	regulatory region 378262	1665 bp upstream
Rr614150	regulatory region 614150	618 bp distal
Rr614151	regulatory region 614151	117 bp distal
Rr614152	regulatory region 614152	295 bp distal
Rr614153	regulatory region 614153	234 bp distal
Rr614154	regulatory region 614154	40 bp distal
Rr614155	regulatory region 614155	within coordinates
Tssr51689	transcription start site region 51689	1046 bp upstream
Tssr51690	transcription start site region 51690	710 bp upstream
Tssr51691	transcription start site region 51691	681 bp upstream
Tssr51692	transcription start site region 51692	618 bp upstream
Tssr51693	transcription start site region 51693	144 bp upstream
Tssr51694	transcription start site region 51694	87 bp upstream
Tssr51695	transcription start site region 51695	64 bp upstream
Tssr51696	transcription start site region 51696	36 bp upstream