rs238429011 SNP Detail

Summary

• ID
  rs238429011
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98658685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGATTTT AAAGAAAGAT
  ATTTTTATGG TAATTGTTGC TCGTCTATTT TACTATATAT TTATGTAATA AATATATGAT
  GAAAATAACC CCCTTGGGCA CCCCCCCTTA GACTTGCGTG CTGTTTCCCC ATATTCTCCC
  ATCTGCTGGC AGAGTACCCA CCCCACAAGC TGACCAGATG GAGAGGTGTC TTCCCCCCCC
  M
  CCACACCCCC TTGGCAGTAG TCCCCCACCC CCACCCCAAT TCCCCAAACG AGCACACATC
  ACAGAAGCCA GCTCAGCTGT GAACTATTGG ATTTGAGACA GGAACAGAAC AAATCGAGGG
  GCCAGAGGAG GGTGGAGAGA GCAAGAGTGG TTTAAATAGG GGAGGATGGG AGCATGGCGG
  TGGGGGTGGG GGAAGAGTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384419259	MGP_WTSI_11_98629173	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238429011					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384419259	MGP_WTSI_11_98629173	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98658685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3768	CpG island 3768	356 bp proximal
Gm57390	predicted gene, 57390	112 bp downstream
Nr1d1	nuclear receptor subfamily 1, group D, member 1	73 bp downstream
Rr456271	regulatory region 456271	1476 bp distal
Thra	thyroid hormone receptor alpha	within coordinates
Tssr104786	transcription start site region 104786	1582 bp downstream
Tssr104787	transcription start site region 104787	1512 bp downstream
Tssr110587	transcription start site region 110587	365 bp downstream