rs238431145 SNP Detail

Summary

• ID
  rs238431145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122825542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACAGCCT TTTCTTCCTG
  TCTACAAAGA TCAGCAGCAT AAGAGGTGTT TTAGGCACAC CATGGTAAAT ATCAGAAGGA
  ACAGCTACAA TTCTTGCAAA GTAGGGAGAG ATGGGAACTA CTGGGCACTG GAGAAACCAC
  CCTTTTTTAT TTCATTTTTA ATTAGTTCCT TTAAAATTGG CTGCATACAG TACTTTATAT
  Y
  AGCATGGTCC AGGCAAACAT TAATTTGAAA AAAAAAAAAA GAAAAGAAAA GAAAAGAAAA
  AAAAGAGAGT GTGCCTGACA CTTTTGTCAT GTAAGATACC TAGACTCATG TTTAAAATCT
  TTTGATATTG CTGTTGAAGC ATGCATTGAT CCTGAAGTTC CACCCATCAT CCCATTAGGA
  TATTGTTTTA TTCTATGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914758	MGP_WTSI_6_122798601	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238431145					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914758	MGP_WTSI_6_122798601	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122825542 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	607 bp downstream
Tssr58710	transcription start site region 58710	387 bp downstream
Tssr58711	transcription start site region 58711	1874 bp upstream
Tssr58712	transcription start site region 58712	1992 bp upstream
Tssr62966	transcription start site region 62966	797 bp upstream
Tssr62967	transcription start site region 62967	752 bp upstream
Tssr62968	transcription start site region 62968	704 bp upstream
Tssr62969	transcription start site region 62969	384 bp upstream
Tssr62970	transcription start site region 62970	364 bp upstream
Tssr62971	transcription start site region 62971	304 bp upstream
Tssr62972	transcription start site region 62972	204 bp upstream
Tssr62973	transcription start site region 62973	143 bp upstream
Tssr62974	transcription start site region 62974	57 bp upstream
Tssr62975	transcription start site region 62975	24 bp downstream
Tssr62976	transcription start site region 62976	70 bp downstream
Tssr62977	transcription start site region 62977	133 bp downstream
Tssr62978	transcription start site region 62978	210 bp downstream
Tssr62979	transcription start site region 62979	241 bp downstream
Tssr62980	transcription start site region 62980	266 bp downstream
Tssr62981	transcription start site region 62981	285 bp downstream
Tssr62982	transcription start site region 62982	446 bp downstream
Tssr62983	transcription start site region 62983	903 bp downstream
Tssr62984	transcription start site region 62984	973 bp downstream
Tssr62985	transcription start site region 62985	1016 bp downstream
Tssr62986	transcription start site region 62986	1327 bp downstream
Tssr62987	transcription start site region 62987	1457 bp downstream
Tssr62988	transcription start site region 62988	1525 bp downstream
Tssr62989	transcription start site region 62989	1684 bp downstream
Tssr62990	transcription start site region 62990	1730 bp downstream
Tssr62991	transcription start site region 62991	1757 bp downstream
Tssr62992	transcription start site region 62992	1782 bp downstream
Tssr62993	transcription start site region 62993	1876 bp downstream
Tssr62994	transcription start site region 62994	1982 bp downstream