rs238434004 SNP Detail

Summary

• ID
  rs238434004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:35700149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAAGGTA GATGTTGAGT
  AACCTGTGCC CCTGTGGGTG GGTCATTAAA CCCCACGCCC TTTTTTTTCT TTCTGGTCTA
  CCATTTTGAA ATACAAATAA TGATCTAAGT ATTATAGTCC ATTAACACTA GTCCCAGCCC
  TTTTCCTAAT TTACAACTTA GGTTAGACCA CATATCACAA TAAAACTCAA CCTTGGGGCT
  R
  GAGAGATGGC TTAGTGGTTA AGAGCACTGA CTGCTCTTCT GAAGGTCCTG AGTTCAAATC
  CCAGCAACCA CATGGTGTCT CACAACCATC CATAATGAAG ACAGCTATGG CGTATTTACA
  TATAATAAAT AAATCTTAAA AAAAAACAAA ACTCAACCTT GACTGAGCTA CCTCTATAAT
  TCAGTTAGTA CAACAATGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324921783	CHEV_15_35629758	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238434004					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:35700149 () rs orientation: forward

Symbol	Name	Function Class
Rr647	regulatory region 647	1366 bp proximal
Rr309492	regulatory region 309492	1222 bp proximal
Vps13b	vacuolar protein sorting 13B	within coordinates