rs238434180 SNP Detail

Summary

• ID
  rs238434180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21335952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTGTGTGT CCCAttccta aggtttctat
  aacaatgtac cacaaacttt gtatcttaaa ataatataaa cttattcttg ctcagttctg
  ggggaggtgt ctgacgtcta agtctgcgat ccactaggtt ctctcagaag gctttaataa
  Y
  gaatctttct tagcttgatg gccagtaacg ctgaaatacc ttggtttgct gatataatac
  tcaaatcttt acatctgtag agatcgttct tccAGAAGAC AGTATCAGGA GTTACAGGTG
  GAACAGATGG AACACTCTCT AGGACAGAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319656024	CHEV_1_21255809	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238434180					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21335952 () rs orientation: forward

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	67 bp downstream
Rr408399	regulatory region 408399	1213 bp proximal
Tssr6078	transcription start site region 6078	861 bp downstream