rs238439206 SNP Detail

Summary

• ID
  rs238439206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144981657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTAAGCCTC ACAGTCTAAA TTGGATCGCC
  AGGAATCACG GTGTGGAAAG ACTGTGATTC TAAAACTCCT GAAAGTTGTT CATGTACATG
  TCTCCTTACT CCCCACCCCA ACACATACAC CAGTCTAAAT catacataca tacatacata
  Y
  atacatacat acatacatac atacatGTAA TTTTAAAAAA CATTTTTAAA GGTCTATTTA
  AAAAGTCCCT GGTTGActgg tctacaaata caaagtgagt tccaggacag ccagaggtag
  acagagaaat catgtctcaa aaaaccaaaa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321413246	CHEV_4_144844990	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238439206					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144981657 () rs orientation: forward

Symbol	Name	Function Class
Gm36233	predicted gene, 36233	1789 bp downstream
Rr398674	regulatory region 398674	239 bp downstream
Rr604348	regulatory region 604348	178 bp distal
Tssr40207	transcription start site region 40207	308 bp downstream
Tssr44535	transcription start site region 44535	627 bp upstream