rs238440124 SNP Detail

Summary

• ID
  rs238440124
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11685222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACGGCCT CAACTGCAGT
  CTGCCCGCCC CGCTCGGAAG AGCCACAAGT GTGCACATGC GCCCTGGATC CTTCGGGGGA
  GCCGGCGAGA CGGACCCCAT TTCCGCCCCG CCTCCCAACA CTCCCCGCGC CCCCGGAGGT
  CCTGGGTCGC GCGCCGCCCG CCGCACATGC GCCTTGAAGC CCTCGAGGCG CCCGCGGCGT
  S
  TGAGCAGCTT CCGCGCCCCC CACCCCCCAC CGTCCTGGGT CGCAGACCGC GCGGTACCGC
  ACATGCGCCC TGGAACTCTC AGGGGTTGCG CTGCCGCTGC CGACCGCGCT CTCCAGACAC
  CGTGGGGTGC GCTCTGACCC TAACAGCACA CCACGCGGAA AATGGCGCCT TAAAGTGCCC
  GCGCCCACCT TGCCGAAGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322492726	CHEV_8_11635222	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238440124					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11685222 () rs orientation: forward

Symbol	Name	Function Class
Ankrd10	ankyrin repeat domain 10	within coordinates
Cpgi20087	CpG island 20087	within coordinates
Gm64331	predicted gene, 64331	148 bp upstream
Mir7238	microRNA 7238	472 bp downstream
Rr186041	regulatory region 186041	within coordinates
Rr400761	regulatory region 400761	496 bp upstream
Tssr80389	transcription start site region 80389	174 bp upstream
Tssr80390	transcription start site region 80390	143 bp upstream
Tssr80391	transcription start site region 80391	419 bp downstream
Tssr80392	transcription start site region 80392	471 bp downstream
Tssr80393	transcription start site region 80393	507 bp downstream
Tssr80394	transcription start site region 80394	523 bp downstream