rs238443594 SNP Detail

Summary

• ID
  rs238443594
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140843035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAGTGCT GTGGGTCTCA
  GAGGTTTAGG CACACACAGG CCCCACCTTC CCAAGTACAC CTGGCATCGG GGTGTTCCCG
  ATTCCTGTCT TAGAGTGTTT GTGTCCAGTA AGAGCTGTGC TAGCCTAGCC AGTTCTTGAT
  TATGAAAGTG AGTGCTGCAA AGGAGGCCTG GTGTGTAGGG ACTGGGGGTC ACCTTCTTTC
  M
  AGGGACTCTA CAAGGTCCAC TAGAGACACT ATACAGCAAG GAGCAGACCT GACCCAGGGC
  TCCACTGATT TTGAACTATT TATTGGGAGT TGGGATTCTG AGTCAAGGCC ACTGACCCAG
  GTCCATGAGG AAGTGTTCGA TGTCTTCGTA GAGACTGTTG GTGCTAGACA AGCACAAGCC
  GAGACTGCTG CTGTCCAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373428478	MGP_WTSI_7_148449021	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238443594					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373428478	MGP_WTSI_7_148449021	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140843035 () rs orientation: forward

Symbol	Name	Function Class
Irf7	interferon regulatory factor 7	61 bp downstream
Phrf1	PHD and ring finger domains 1	372 bp downstream
Rr154683	regulatory region 154683	1966 bp proximal
Rr166948	regulatory region 166948	1765 bp proximal
Tssr69941	transcription start site region 69941	61 bp upstream
Tssr75604	transcription start site region 75604	403 bp downstream
Tssr75605	transcription start site region 75605	561 bp downstream
Tssr75606	transcription start site region 75606	699 bp downstream
Tssr75607	transcription start site region 75607	775 bp downstream
Tssr75608	transcription start site region 75608	832 bp downstream
Tssr75609	transcription start site region 75609	850 bp downstream
Tssr75610	transcription start site region 75610	875 bp downstream
Tssr75611	transcription start site region 75611	1131 bp downstream
Tssr75612	transcription start site region 75612	1393 bp downstream