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rs238444465 SNP Detail
Summary
  • ID
    rs238444465
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr18:82604006 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGAGTGAAGC ACAGCCTCGT
CGCAGGGTGG AGGGCTCTTC CTCAGGGGCA CCGGGTTGCT TCACGGTGCC CTTGGGAGAA
TACCTCAAGG GGCACGTTGA GGAGGCCATG CATTGATAAA TCAAGAAGAT GGAGTAGAGG
TGATGTGGGA CAGTGACCCA CAACACACAA GGAAAAGGAT TTTCAGTCAC TCTGAGGACA
Y
TTTTCAAAGC CATTGTCCTA GGAAACACTG CAGAAAAGCG GGTCACGCGC TTTATCCACG
GCGGACGGGG ATTAAGTGAA GCATTCTTCC CCCCTCCCCC CATTTGTCCT TTGTTTCTCT
TGCCATTGAT TTTGGTTATG AGACTTCTTT TTCTAAAGGA TTACCCGAAA TCTCTTCTCC
TGTTGGTTTT GAGAGCGCTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401436761 MGP_WTSI_18_82755273 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238444465 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401436761 MGP_WTSI_18_82755273 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:82604006 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D18Nds1 DNA segment, Chr 18, Nuffield Department of Surgery 1 579 bp proximal
Gm58829 predicted gene, 58829 243 bp upstream
Mbp myelin basic protein 244 bp downstream
Rr541827 regulatory region 541827 1746 bp distal
Tssr152152 transcription start site region 152152 1756 bp downstream
Tssr152153 transcription start site region 152153 1632 bp downstream
Tssr152154 transcription start site region 152154 1609 bp downstream
Tssr152155 transcription start site region 152155 1573 bp downstream
Tssr152156 transcription start site region 152156 1504 bp downstream
Tssr152157 transcription start site region 152157 1426 bp downstream
Tssr152158 transcription start site region 152158 1389 bp downstream
Tssr152159 transcription start site region 152159 1365 bp downstream
Tssr152160 transcription start site region 152160 1319 bp downstream
Tssr152161 transcription start site region 152161 1303 bp downstream
Tssr152162 transcription start site region 152162 1282 bp downstream
Tssr152163 transcription start site region 152163 1265 bp downstream
Tssr152164 transcription start site region 152164 1220 bp downstream
Tssr152165 transcription start site region 152165 1147 bp downstream
Tssr152166 transcription start site region 152166 1111 bp downstream
Tssr152167 transcription start site region 152167 1079 bp downstream
Tssr152168 transcription start site region 152168 1050 bp downstream
Tssr152169 transcription start site region 152169 997 bp downstream
Tssr152170 transcription start site region 152170 889 bp downstream
Tssr152171 transcription start site region 152171 845 bp downstream
Tssr152172 transcription start site region 152172 742 bp downstream
Tssr152173 transcription start site region 152173 727 bp downstream
Tssr152174 transcription start site region 152174 693 bp downstream
Tssr152175 transcription start site region 152175 658 bp downstream
Tssr152176 transcription start site region 152176 469 bp downstream
Tssr152177 transcription start site region 152177 289 bp downstream
Tssr154083 transcription start site region 154083 1651 bp upstream
Tssr154084 transcription start site region 154084 1597 bp upstream
Tssr154085 transcription start site region 154085 1340 bp upstream
Tssr154086 transcription start site region 154086 794 bp upstream
Tssr154087 transcription start site region 154087 573 bp upstream
Tssr154088 transcription start site region 154088 544 bp upstream
Tssr154089 transcription start site region 154089 426 bp upstream
Tssr154090 transcription start site region 154090 366 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory