rs238452865 SNP Detail

Summary

• ID
  rs238452865
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59523070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGACTGT GCTCTGCTGA
  GCCTCCTGGG TTCGCAGGAG ATGCATGCAT GTTTAGCTGT TGATTTTTCA CTCTTAGGGA
  TGCCGGGGGT ACCTTCCCCT AGCTACTTAC TGTCTGCTAG GAAGAGCTAC AGCAGGGAGC
  TGGGCTTGCT TGGCTCCCAG GAGCTGATGG CCCCCTAAAA GACAAAAGCA TTTGCAGAAG
  K
  GAGTTCTTCT AGTCACCCTA CAGTAGGGGG TGGGCTCTGG GAGTGTGCTA GCCCAGATCC
  CAAAGTGTAG CTGGTTTGTT GTAAGGGTAT CCTAACAGCT GGAGCTCTGA GGGGCTACCC
  AGAAAAGAAT ATATGAATGG GGCTTATTGC CATTGAAAGC CCAAAGATGG AGAACTCCAG
  CCCAGCTTCA GATAGGACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394214997	MGP_WTSI_15_59482776	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238452865					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394214997	MGP_WTSI_15_59482776	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59523070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7127	CpG island 7127	1376 bp distal
Gm56697	predicted gene, 56697	1599 bp upstream
Rr311787	regulatory region 311787	within coordinates
Rr390806	regulatory region 390806	196 bp upstream
Trib1	tribbles pseudokinase 1	within coordinates
Tssr4603	transcription start site region 4603	944 bp upstream
Tssr131392	transcription start site region 131392	464 bp downstream
Tssr131393	transcription start site region 131393	1864 bp upstream
Tssr134446	transcription start site region 134446	607 bp upstream
Tssr134447	transcription start site region 134447	1610 bp downstream
Tssr134448	transcription start site region 134448	1623 bp downstream
Tssr134449	transcription start site region 134449	1681 bp downstream