rs238456347 SNP Detail

Summary

• ID
  rs238456347
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:102336516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTCTGCTG TCGCCTCCTT CTCTAAGCAG
  CTGTGGAGGC GCGGGGCTCC AGCGGTCCAA TCCGCAGCGT AGGAAGCAGC GGGGCGCTCG
  CCCGCCGCCG GAAGCCGCGA TAGCAGCGGG GGCGAGGGAC CCAAGGCAAG AGCCGCGCCC
  K
  GAGCTGCAGG ACCCACCCAC TGCGCCGGAA CCGACGAATC ACTTCTGCAC TCAGAGTGGC
  CTGATTGGCT GTTCGCTTGC CACGTTTCCT GGTTGAATTC AGCTACCTAG CGTGGGTGCG
  CAGCCGGGCT TCCTTAAGTG GCACCTTTAC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322357790	CHEV_7_109835823	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238456347					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:102336516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19528	CpG island 19528	within coordinates
Gm45527	predicted gene 45527	1090 bp upstream
Rr652623	regulatory region 652623	50 bp distal
Rr652624	regulatory region 652624	within coordinates
Trim68	tripartite motif-containing 68	within coordinates
Tssr73953	transcription start site region 73953	11 bp upstream