rs238460939 SNP Detail

Summary

• ID
  rs238460939
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13252491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGACTGGA CTACATTCTC
  TTCATACACA ACTTTCCCCT TGGTCTGACC ACACAGAGCT GGAACATTTC CTCCTCCATA
  TTTCCTCCTC CTCCTCCTCC TCCTCCTCCT CCTCCTCTTC TACCTCTTCT TCCCGCTCCT
  CCTCCTTCTT GTTGATTTAG TTGGTTAGTT GGTTAGTTGG TTGGTTGGCT TTTTGAGACC
  K
  GGTCTCTGTC TGTACTTCTC TATCCTGGAG CTCACTATGT AGACCAGGCT GGCCTTGAAA
  CCACAGAGAT CCTCCTTCTT CTGCCTCCCA AGCCTAAGTC TTTCTTCCCT GTGACTTCCC
  TGTGACTGGC TGTTGCAACC AAAACAAATA AAAGAGACAT TTGCAAGGTC AAATATGATA
  GCCCCCTCCT TGTCCCTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505069	CHEV_8_13202491	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238460939					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13252491 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	701 bp downstream
Cpgi20110	CpG island 20110	1057 bp distal
Gm56825	predicted gene, 56825	258 bp upstream
Grtp1	GH regulated TBC protein 1	1796 bp upstream
Rr659873	regulatory region 659873	1527 bp distal
Rr659874	regulatory region 659874	1008 bp distal
Rr659875	regulatory region 659875	778 bp distal
Rr659876	regulatory region 659876	269 bp distal
Rr659877	regulatory region 659877	within coordinates
Rr659878	regulatory region 659878	1233 bp proximal
Rr659879	regulatory region 659879	1324 bp proximal
Rr659880	regulatory region 659880	1478 bp proximal
Tssr76386	transcription start site region 76386	1704 bp downstream
Tssr76387	transcription start site region 76387	1520 bp downstream
Tssr80428	transcription start site region 80428	1855 bp upstream
Tssr80429	transcription start site region 80429	1063 bp upstream