rs238462676 SNP Detail

Summary

• ID
  rs238462676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151382648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCATGATC TCTTGAAACA
  AAGACATGGT TGCAAGATGG GAGTAACAAG GTAGTCATAG TCATAACAAG GTGGTCATAT
  AATCTTTTGA AACAAGATGG TTATAAACAA TTCTTTGAAA CAAAGACATG ACTGCCATTC
  CTGGAACAGG CAGTACTGAA CTATTTGTAG TTAAGATTAC AGGTGAGTCA TAGCCCAATC
  Y
  TTGAAAAACA GAAGTTTAAT CATAAATAGG AATGGACCTC CTTTGTCTTT ATGATAAGAT
  GGCTTTTAAG CCTAAGATGG TTGCAGGCTG GATCTTCATT CCCTGCTTGT CTTCTGTGTC
  CCTGTGAAAT CTTTGGTAAG GTCTTAGCAT TCTTTATCTG GGTGAAAACA AAATTTGGAG
  CATATCAAAT GATGAAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356131704	MGP_WTSI_2_151366464	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238462676					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356131704	MGP_WTSI_2_151366464	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151382648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12419	CpG island 12419	1434 bp proximal
Fkbp1a	FK506 binding protein 1a	1755 bp upstream
Gm14167	predicted gene 14167	within coordinates
Rr397389	regulatory region 397389	1385 bp upstream
Rr567163	regulatory region 567163	830 bp proximal
Rr567164	regulatory region 567164	1729 bp proximal
Rr567165	regulatory region 567165	1784 bp proximal
Tssr20722	transcription start site region 20722	47 bp upstream
Tssr20723	transcription start site region 20723	65 bp upstream
Tssr20724	transcription start site region 20724	1751 bp upstream
Tssr20725	transcription start site region 20725	1779 bp upstream
Tssr20726	transcription start site region 20726	1827 bp upstream
Tssr20727	transcription start site region 20727	1931 bp upstream
Tssr20728	transcription start site region 20728	1964 bp upstream
Tssr26737	transcription start site region 26737	1614 bp downstream
Tssr26738	transcription start site region 26738	1666 bp downstream