rs238469549 SNP Detail

Summary

• ID
  rs238469549
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99772364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAGAGGT GGTTATATAG
  AGTTACAATG TCAGTGAATA TTAGAGCTGG GAACAGAAGC CAGTTACATT TACCATATAG
  TTCTTTCTAG TGCCCTGCAA TCCTACTAAT GCTTTTCCGT TTACAGAACA AAACTACTGC
  CCCCTTGCTT TCTCCCTTAA AAAGGAAGTG GGGGGGGGGG GACAAGGATT ATTCCTTACC
  K
  TATGCCAGAT TTCTTGTCTC CAGTTAGAAG CCAGAAGGGG GGCCAGCCAT GCAGTACCTC
  ATACAGGCTA TATTTGAAAC CTTTTGGGAG TTTGCAAGCC TTGAGGCTCA TCCATGCATA
  TCGAATGCTG TCCCCACCCC ACCACCCCCA AAAGGCTCTC AAACCATCCC CACGTACAAG
  AAAACAAGAC TCTAGAATCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss404170211	MGP_WTSI_X_97924097	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs238469549					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404170211	MGP_WTSI_X_97924097	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99772364 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	1115 bp upstream
Gm52438	predicted gene, 52438	within coordinates
Kif4	kinesin family member 4	1486 bp downstream
Rr692772	regulatory region 692772	694 bp proximal
Rr692773	regulatory region 692773	1303 bp proximal
Rr692774	regulatory region 692774	1439 bp proximal
Tssr161618	transcription start site region 161618	1060 bp upstream
Tssr161619	transcription start site region 161619	1078 bp upstream
Tssr161620	transcription start site region 161620	1159 bp upstream
Tssr161621	transcription start site region 161621	1222 bp upstream
Tssr161622	transcription start site region 161622	1361 bp upstream
Tssr161623	transcription start site region 161623	1368 bp upstream
Tssr161624	transcription start site region 161624	1398 bp upstream
Tssr161625	transcription start site region 161625	1420 bp upstream