rs238471060 SNP Detail

Summary

• ID
  rs238471060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAGTGT CTTGTTCCTG
  GCCCCAGAGT TAGGCAAGCC AGGATGCCAG TTATGGCTAC TGTTCACATC TTCAATACAA
  ACCTGTGTTC ACTGGCCTTC TGAAAGGTTG AAGTTCGAAA GGAGAGGGAC GTGGCTACCC
  CAAGCTCATG TGGTAGCAGG TAGAGCTGGG ACTAGATCTG AATATGGGGT GGTAGAGGGG
  Y
  TCGGGGGTTC CATGAGTCAC CAAAGTAGAT GAAGCAGAAG ACCTTGAGCC CAGGTTCCAT
  CTTCCTTCAG AAGGCCAAGA AATTTAAACC TATTCTCCCT CCTGTCTGAT CTCCTTTCTC
  CAGCCCTTGG CTTAGGAAAT ACAGAGGGTT GGCAAGCCAA TGAGAATTAG CTGTGTCTGT
  GATGTCATAA GTTACCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400867886	MGP_WTSI_18_60966179	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238471060					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400867886	MGP_WTSI_18_60966179	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939597 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
Rr405670	regulatory region 405670	1366 bp downstream
Rr405671	regulatory region 405671	568 bp downstream
Rr405672	regulatory region 405672	within coordinates
Tssr5344	transcription start site region 5344	1146 bp upstream
Tssr151328	transcription start site region 151328	1508 bp downstream
Tssr151329	transcription start site region 151329	1437 bp downstream
Tssr151330	transcription start site region 151330	557 bp downstream
Tssr151331	transcription start site region 151331	538 bp downstream
Tssr151332	transcription start site region 151332	472 bp upstream
Tssr151333	transcription start site region 151333	1010 bp upstream
Tssr151334	transcription start site region 151334	1374 bp upstream
Tssr151335	transcription start site region 151335	1383 bp upstream
Tssr151336	transcription start site region 151336	1417 bp upstream
Tssr151337	transcription start site region 151337	1471 bp upstream
Tssr151338	transcription start site region 151338	1527 bp upstream
Tssr151339	transcription start site region 151339	1706 bp upstream
Tssr153493	transcription start site region 153493	1530 bp downstream
Tssr153494	transcription start site region 153494	1552 bp downstream
Tssr153495	transcription start site region 153495	1768 bp downstream