rs238471587 SNP Detail

Summary

• ID
  rs238471587
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72197174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACTGAA GCAATAATAT
  GTTGAGACAT TAGAGAATGA ATAATTCATT CTGAGATTTG ACTCATGCGT TTGGAAATAG
  GTATTGCTCA ACGTCTTTGC TGTTGAGAGC TGCCCTCAAA GCTGCAAGGA TCCTCTTCCT
  GATGAGGAGG GGGAGGAGGG AAGCAAGAAC TTCTGCAATT GTATACAGCA GACAATTAAA
  K
  CAGGCCAGCT TGAGTCCCAC CTCAGTCCAA AGCTCTCCCA AACCTCCACA GTGGGACTGG
  TCAGATATTA ATAATTCACA AATACTTGAA GCAGGAGAGA GCATTTTTCA ATTCTTCTCG
  GTGGTTTGAA ATAAAAACAA AGCAGAAGAC TCCATAAAAA ACAGATTGAA TGGAATTTTG
  TGATTACAGC ACGTAGATGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342097	CHEV_2_72204887	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238471587					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72197174 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			462 bp distal
Rr558962	regulatory region 558962			within coordinates
Tssr18337	transcription start site region 18337			1814 bp downstream