rs238474342 SNP Detail

Summary

• ID
  rs238474342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34757834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGACAGAC GCGGGGAACT
  CTGGGAAACA CAGTGCGAAT CCGTTCGCGG TGCCTCGTGG GTAATGTGGG TGGGTCAGTT
  TGCCCTAATA GAAGCGAAGT TCCTCTAGGA AAAAAAAATC TGCTTTTTAA CTAATAAAGG
  ACAAGGGATT GCGGCTGAAG CCTCAGAAAA GAAACGTCTA GATTTAGAAT TAAGCGACAA
  R
  AATACCAGGA TGAACAACAT GGAAGTGTCA GTTGGTAACC CGGACCCACA TTAAAAGCAA
  ACGGTCTTCC GGTAGGCTCT GCCTCCTCCC TTCTGCTGAT TGGGTCCTTC AGGCTTTGCT
  TTTTGATTGG CCGGACAAGC TCAGCGCGCA GTTTAAAACA TTGTATGAGG AACAAAGCTG
  TTCCTCGTGG GCGGAGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400243387	MGP_WTSI_18_34784435	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238474342					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400243387	MGP_WTSI_18_34784435	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34757834 () rs orientation: forward

Symbol	Name	Function Class
Brd8	bromodomain containing 8	180 bp upstream
Cpgi9821	CpG island 9821	within coordinates
Kif20a	kinesin family member 20A	within coordinates
Rr352687	regulatory region 352687	within coordinates
Rr370355	regulatory region 370355	502 bp downstream
Rr370356	regulatory region 370356	87 bp downstream
Rr405583	regulatory region 405583	within coordinates
Tssr5275	transcription start site region 5275	179 bp upstream
Tssr150465	transcription start site region 150465	152 bp downstream
Tssr150466	transcription start site region 150466	119 bp downstream
Tssr150467	transcription start site region 150467	174 bp upstream
Tssr150468	transcription start site region 150468	228 bp upstream
Tssr150469	transcription start site region 150469	261 bp upstream
Tssr152814	transcription start site region 152814	190 bp upstream
Tssr152815	transcription start site region 152815	within coordinates
Tssr152816	transcription start site region 152816	41 bp downstream