rs238478465 SNP Detail

Summary

• ID
  rs238478465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44500316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGAGAC TTGCCACTCT
  TTGCCCTCAC GAAAGTGAGG ACCGAAGCTG TGTCATCTTG GATCAGTCAC TTTCTTGCCC
  TTAGCCATAA TCCTAAACTT CCAGCCTCCT TTATTAGCTA GGAGAGGTGG AAGGTGTGTG
  TAGGAGTTGC TGGGCGCCTT TTAAAGCTGT AGGTAGGACT TTGAGGCCCA GCAGACAGTA
  R
  TGTCAAAGCA CTGCAGCTTT CTCCCTCTCC ATGGAAAGAT GGGATGGGGG GATGCAGTCT
  AATGAGGTAG GCAGGGTGGA GCGCAGTATT GGCAGAGAAG GCTCTAGACA CAGACTGCTC
  TTCTCAGTGG TCAGCTCTGC CAGTATAACA GTCAAGAGCC TGGATTCAGA GCTTCAGGCT
  GTAAAGTGGG GTGTCCATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371164937	MGP_WTSI_7_52106262	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238478465					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371164937	MGP_WTSI_7_52106262	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44500316 () rs orientation: forward

Symbol	Name	Function Class
Akt1s1	AKT1 substrate 1	within coordinates
Cpgi18996	CpG island 18996	235 bp distal
Cpgi18997	CpG island 18997	1744 bp proximal
Mir707	microRNA 707	1121 bp downstream
Rr167667	regulatory region 167667	within coordinates
Tssr66435	transcription start site region 66435	1778 bp downstream
Tssr66436	transcription start site region 66436	1597 bp downstream
Tssr66437	transcription start site region 66437	1263 bp downstream
Tssr66438	transcription start site region 66438	866 bp downstream
Tssr66439	transcription start site region 66439	500 bp downstream
Tssr66440	transcription start site region 66440	478 bp downstream
Tssr66441	transcription start site region 66441	1884 bp upstream
Tssr72236	transcription start site region 72236	1983 bp upstream
Tssr72237	transcription start site region 72237	1025 bp upstream