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rs238478465 SNP Detail
Summary
  • ID
    rs238478465
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44500316 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGCTGAGAC TTGCCACTCT
    TTGCCCTCAC GAAAGTGAGG ACCGAAGCTG TGTCATCTTG GATCAGTCAC TTTCTTGCCC
    TTAGCCATAA TCCTAAACTT CCAGCCTCCT TTATTAGCTA GGAGAGGTGG AAGGTGTGTG
    TAGGAGTTGC TGGGCGCCTT TTAAAGCTGT AGGTAGGACT TTGAGGCCCA GCAGACAGTA
    R
    TGTCAAAGCA CTGCAGCTTT CTCCCTCTCC ATGGAAAGAT GGGATGGGGG GATGCAGTCT
    AATGAGGTAG GCAGGGTGGA GCGCAGTATT GGCAGAGAAG GCTCTAGACA CAGACTGCTC
    TTCTCAGTGG TCAGCTCTGC CAGTATAACA GTCAAGAGCC TGGATTCAGA GCTTCAGGCT
    GTAAAGTGGG GTGTCCATTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371164937 MGP_WTSI_7_52106262 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238478465 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss371164937 MGP_WTSI_7_52106262 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44500316 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Akt1s1 AKT1 substrate 1 within coordinates
Cpgi18996 CpG island 18996 235 bp distal
Cpgi18997 CpG island 18997 1744 bp proximal
Mir707 microRNA 707 1121 bp downstream
Rr167667 regulatory region 167667 within coordinates
Tssr66435 transcription start site region 66435 1778 bp downstream
Tssr66436 transcription start site region 66436 1597 bp downstream
Tssr66437 transcription start site region 66437 1263 bp downstream
Tssr66438 transcription start site region 66438 866 bp downstream
Tssr66439 transcription start site region 66439 500 bp downstream
Tssr66440 transcription start site region 66440 478 bp downstream
Tssr66441 transcription start site region 66441 1884 bp upstream
Tssr72236 transcription start site region 72236 1983 bp upstream
Tssr72237 transcription start site region 72237 1025 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory