rs238482713 SNP Detail

Summary

• ID
  rs238482713
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47414919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTTGTAT TGCAGTAAAA GATTTAAAAA
  AAAAAAAAAA GAACAGGgag acccatgggt ctctatgagt tttaggctag cctagtctac
  attgtgGAAC TCTCAgaagg aaggaaggaa ggaaggaagg aaggaaggaa ggaaggaagg
  R
  aggaaggaaa gaagggagag agagaaagaa agggagagag agagaaagga cagagggaaa
  gagGTTGGAT ATGTTGAGtt attttatagt aaaaaaaatt aaaattGGAT AAACAAATGC
  TTTAAAATTT GTGTTTTGCT GAAAATTCTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324594799	CHEV_14_47797137	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238482713					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47414919 () rs orientation: forward

Symbol	Name	Function Class
Gch1	GTP cyclohydrolase 1	within coordinates
Gm18811	predicted gene, 18811	421 bp downstream
Rr491339	regulatory region 491339	347 bp proximal
Tssr128307	transcription start site region 128307	1798 bp upstream
Tssr128308	transcription start site region 128308	125 bp upstream
Tssr128309	transcription start site region 128309	376 bp downstream
Tssr128310	transcription start site region 128310	413 bp downstream