rs238485779 SNP Detail

Summary

• ID
  rs238485779
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:75827894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTTAAG TCTAGCTTTG
  AACTCATTGA GTTCTTCCTA CCTCTGCCTT CCAAGAGCTG GGTTTAAAGA TATGTACTAC
  CACACCTGGT GAGTCCACTT TGTTTTTCGA GTGCTAGGAT TACAGACACA CACCACCATG
  TCTGTTTTAC ATGGGCTCCA ACTCAGGTCT TTACTGATTG ACCTATCTCT TCAGCCCCAA
  S
  ACTTCCATAT TTAATTAGGA TGAAATGGGC AGAGCTGGGA TAAAGCTGAT ACGCTCTGAG
  TAACGATACT TGGAGACTGG AGGCAAATGC CTGGCTTCGT GTTTTCTCTT CTAGCTTCAC
  TTACTGTGAG TGCACTTATT GGTATGCAAG ACCACAGGGC TCAGTGTGGG GAGACAGCTC
  CCTCCTTCCA TTTTTGTAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375183007	MGP_WTSI_8_77625165	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238485779					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375183007	MGP_WTSI_8_77625165	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:75827894 () rs orientation: forward

Symbol	Name	Function Class
Hmox1	heme oxygenase 1	677 bp downstream
Tssr78063	transcription start site region 78063	1378 bp downstream
Tssr78064	transcription start site region 78064	1317 bp downstream
Tssr78065	transcription start site region 78065	1295 bp downstream
Tssr78066	transcription start site region 78066	1250 bp downstream
Tssr78067	transcription start site region 78067	1217 bp downstream
Tssr78068	transcription start site region 78068	1179 bp downstream
Tssr78069	transcription start site region 78069	1128 bp downstream
Tssr78070	transcription start site region 78070	1083 bp downstream
Tssr78071	transcription start site region 78071	1029 bp downstream
Tssr78072	transcription start site region 78072	1014 bp downstream
Tssr78073	transcription start site region 78073	944 bp downstream
Tssr78074	transcription start site region 78074	890 bp downstream
Tssr78075	transcription start site region 78075	881 bp downstream
Tssr78076	transcription start site region 78076	836 bp downstream
Tssr78077	transcription start site region 78077	741 bp downstream
Tssr81820	transcription start site region 81820	673 bp upstream