rs238488111 SNP Detail

Summary

• ID
  rs238488111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120882037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCGGTG CGGCTCGCTA
  CTGCCCGCCC GGCCGCTTCC TGGGTCTGCG CTCCGGGAGG CGGCGCCGCT GCTGCCGCTA
  CTGCGGGTCC GGTCCGACTC CGCCCCCCTC ACGGCCCCGC TTTCACCATC GCTTTCCGGT
  CGCCCCGTCG CTCTCAGCGC CTCAATACGG GGCGGATGGG ACAGTCCGAG CGCCGCCGCC
  R
  CTGCTCCGGC CCTTGCCGGC CCCGCTCGCC CTCTCCCCGC CGCGGATGGA CTCGGATCTT
  CCGGGCCTAA ATCCCCCTTC AGCTGCCTAA AGGAGCCGCC GCCATCGCGC TGTGACGTCA
  CTTCCCCTAG CAACCCAAGG GGGCGGGGCC ACCGTGCTCG GGGGCGGGGC TTGGCTACTT
  GATGGATTGC GCAGTCGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384952594	MGP_WTSI_11_120852525	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238488111					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384952594	MGP_WTSI_11_120852525	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120882037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	within coordinates
Csnk1d	casein kinase 1, delta	within coordinates
Gm53204	predicted gene, 53204	232 bp upstream
Gm57327	predicted gene, 57327	within coordinates
Rr403207	regulatory region 403207	within coordinates
Rr461863	regulatory region 461863	2000 bp distal
Rr461864	regulatory region 461864	130 bp distal
Rr461865	regulatory region 461865	283 bp distal
Rr461866	regulatory region 461866	131 bp distal
Rr461867	regulatory region 461867	26 bp distal
Rr461868	regulatory region 461868	within coordinates
Rr461869	regulatory region 461869	109 bp proximal
Rr461870	regulatory region 461870	224 bp proximal
Rr461871	regulatory region 461871	1397 bp proximal
Rr461872	regulatory region 461872	1585 bp proximal
Tssr106388	transcription start site region 106388	636 bp downstream
Tssr106389	transcription start site region 106389	171 bp upstream
Tssr106390	transcription start site region 106390	201 bp upstream
Tssr112430	transcription start site region 112430	174 bp upstream
Tssr112431	transcription start site region 112431	137 bp upstream
Tssr112432	transcription start site region 112432	116 bp upstream
Tssr112433	transcription start site region 112433	105 bp upstream
Tssr112434	transcription start site region 112434	49 bp downstream
Tssr112435	transcription start site region 112435	94 bp downstream