rs238500867 SNP Detail

Summary

• ID
  rs238500867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153063170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGCTGACC AGGAGAGATG TGGCTGGCTT
  TGTACAGAAC ATGGAGTCTG AACTAGATAC CTAGTTCTAA CCAGGAAGTA GACAAAGCAT
  TGAAGAGCAA CAGAGGCAAG ATAGGGTACT GCAGACAAGC CGACATCTCT AAAATCTAGC
  R
  CAAAATGAGC AACAGAATGG ATATTCTAAT TTTCTTAACC TAGACTCAAC TCTCTTCTGC
  TCTGTCCAAA TAATGTGGAG ATTCTTCTCA CTCAGAATCA GTGCCCAGCT ACTGCTAACA
  CTTCAGTTCC TTGAGAGCAG GCATCTATAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320071246	CHEV_1_155034554	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238500867					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153063170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	957 bp distal
Lamc2	laminin, gamma 2	977 bp upstream
Rr13130	regulatory region 13130	within coordinates
Rr25076	regulatory region 25076	822 bp proximal
Rr28719	regulatory region 28719	769 bp distal
Tssr14250	transcription start site region 14250	1368 bp upstream
Tssr14251	transcription start site region 14251	1332 bp upstream
Tssr14252	transcription start site region 14252	1302 bp upstream
Tssr14253	transcription start site region 14253	1288 bp upstream
Tssr14254	transcription start site region 14254	1269 bp upstream