rs238504882 SNP Detail

Summary

• ID
  rs238504882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59039691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAAAGTA AAAGTTCCTC
  AAACTGTCTC GTATCTCCTA AGCAACTATC AAACTGTTCT TCTAGCATCC TTTGCAGATG
  CATTAGAAAA TAGTTCCTGT GTGCTGTCTT CACTTCCCTT CTACCTTGTA ATCTATTTTC
  CTGTGTGACT TCATGGAAAC TGCACAAATC CAGCCCCACT ACCCATTGCT CAGCCTACTC
  R
  TTATTTTTAA AAGATATATA AAGGCAGCAT TTGTTTTTTA ATTGTGAAAG TGCACACAAA
  TGTTCTGTCT TGACCTGTTT TCTTTTCTGA AATAACCCTG TTGTGAGTTT CAGGCTCACC
  TGGACTTCCT GTAGGAGCTC AGCAGCCTCA GAGCTTGTAG TCCTTGTGTC TTTGTACTTG
  TGGATGGAGT TAGGTGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358113079	MGP_WTSI_3_58936192	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238504882					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358113079	MGP_WTSI_3_58936192	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59039691 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Rr577320	regulatory region 577320	1659 bp distal
Rr577321	regulatory region 577321	1418 bp distal
Rr577322	regulatory region 577322	954 bp distal
Rr577323	regulatory region 577323	853 bp distal
Rr577324	regulatory region 577324	within coordinates
Rr577325	regulatory region 577325	963 bp proximal
Tssr29228	transcription start site region 29228	404 bp downstream
Tssr29229	transcription start site region 29229	25 bp upstream
Tssr33381	transcription start site region 33381	1727 bp upstream
Tssr33382	transcription start site region 33382	1667 bp upstream
Tssr33383	transcription start site region 33383	1642 bp upstream
Tssr33384	transcription start site region 33384	1630 bp upstream
Tssr33385	transcription start site region 33385	1610 bp upstream
Tssr33386	transcription start site region 33386	1579 bp upstream
Tssr33387	transcription start site region 33387	1506 bp upstream
Tssr33388	transcription start site region 33388	1189 bp upstream
Tssr33389	transcription start site region 33389	1176 bp upstream
Tssr33390	transcription start site region 33390	1129 bp upstream
Tssr33391	transcription start site region 33391	1031 bp upstream