rs238505789 SNP Detail

Summary

• ID
  rs238505789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105572297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCAAGCT TTTTCCTCGC
  TGAAAATCCA TAACGTAAAC GACTCAGCTG GCTTCCACTC TGCCTTTTTG CATGTGTCTT
  GGTCCCTTTA GGTTCCCATT AGCAGCACCC AGATTTCCTG CTGGTCCAAC TGCTGGTCCT
  CTAAGATGAA ATGAAGGATG TGGCAGTCCC AGAATTCCTG GTGCTGAGTT TGTAGAGTGA
  Y
  GCAGCATGAA TGGATCACCC ATTGTGTGTC CAGTATCACT GTCAGGATTC CATTCTGGGT
  AGATTTCAAG AAGAAGCTGG CATCGACAAC TGTGACTTGC TCCACTGGTA TATTGACTCC
  ACTCCTTATT AGAATGAACT GGCATATCAC ATATAGAGCA CAAATGGGGA TAACCCTTCA
  GTAAGAGTCC GTGTAACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SJL/J	SPRET/EiJ	WSB/EiJ
ss375902298	MGP_WTSI_8_107369565	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SJL/J	SPRET/EiJ	WSB/EiJ
rs238505789					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375902298	MGP_WTSI_8_107369565	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105572297 () rs orientation: forward

Symbol	Name	Function Class
Ces2c	carboxylesterase 2C	1403 bp upstream
Gm33715	predicted gene, 33715	within coordinates
Matr3-ps2	matrin 3, pseudogene 2	within coordinates
Rr668766	regulatory region 668766	1057 bp proximal
Tssr79079	transcription start site region 79079	1396 bp upstream