rs238519189 SNP Detail

Summary

• ID
  rs238519189
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152181058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATGCTGGA GACCCAGCAA GGAGAGTTGT
  CCACGGGTGT CTGGCAAGCA GCGTCCTAGG ATCCCAAGGA AGTTGACCCG TAAACCAGCT
  GCACCCTCCT GTGTGGTGTC TGGAGCCCAG CCCCTGGGGT GGAGAAGCAT GGGGTTAAGG
  G
  CCAAAAGCTG GGCTTCCAAG TCTGTACTCT GGTCTGAGTA GCCCAGGCTG GGAGTGGCTG
  GGGTTCCGCG GGGTGTCACC AGCCCAGCCC CCTTCACCCC TCCCAGGCGC AACTGCACAA
  TGGCAGGAAG CGGGGCTCAG TGCTTTGTCC                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321433893	CHEV_4_151470710	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238519189					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152181058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15387	CpG island 15387	89 bp proximal
Plekhg5	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	within coordinates
Rr377434	regulatory region 377434	213 bp upstream
Rr605737	regulatory region 605737	422 bp distal
Rr605738	regulatory region 605738	within coordinates
Rr605739	regulatory region 605739	283 bp distal
Rr605740	regulatory region 605740	1068 bp proximal
Rr605741	regulatory region 605741	1575 bp proximal
Tssr40496	transcription start site region 40496	97 bp upstream
Tssr40497	transcription start site region 40497	135 bp upstream