rs238519779 SNP Detail

Summary

• ID
  rs238519779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:50844784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGAGTG GGTGGGTTGG
  GGAGCAGGGC GAGGGGAGGG TGTAGGGGAC TTTTGGGATA GCATTTGAAA AGTAAATGAA
  GAAAATATCT GATAAAAAAA GATTTATTTT TGCATTTGCA GATATTTACT TTGAAATTAT
  TGCACATTTA AAGAAAACGA ACAGTGCTAT TATAGTTCAT CCACACACAC TGTTTACATT
  Y
  GCAATACTTA ATTGTCTCCT CAATTTTCTC TGCCATGATT TATTCCCTTC TCTCATCCTA
  TATATTTTTT TCTGGATCAT TTGTGAGTAG ATACATACAT GATGGCATCT TATCTAAACC
  TTGGTATTTG TGTATTTCAT CTGGACATGA CTATTCTTCC AGTTAAGTTA ACTTCAGTAT
  AACTATCGGT CTGAGGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323299468	CHEV_10_50688494	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238519779					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:50844784 () rs orientation: forward

Symbol	Name	Function Class
Sim1	single-minded family bHLH transcription factor 1	within coordinates
Tssr93227	transcription start site region 93227	673 bp upstream