rs238519831 SNP Detail

Summary

• ID
  rs238519831
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116026348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTTCTT TACATCCTTT
  TGCCTGCATA TCTCTGATGT GTGAGCCTGG TTCTTACGGA GTTCAGAGCA GCCCATCAGA
  TCCCCTGGAG TCCTGGAACT GAAAGTTAAG GAGGCAGTGA GCCACCATGT GGGTGCTGGA
  AATCAAACCA AGGTCCTTTG CAGCCTCAAC CACTATGTCA TTTCTCCAGC CCCCCCCCCC
  S
  CCCCCCCCCC ACTCTTCTTT TCCCCCTCTC CATATTCTGG AATCCAGAGT ATGGCCCTGG
  TCATTCTGCC AGCAGGTGGC ACTATGGGCC TACAAAGGAG ACACTATCAC CCCAAGGTTC
  TGTAACCCTT CTTTTCTGGG GCTCCCTCTT TGTTTTCCTA CTCCAAGCTT CCTGGTTGAG
  AGGTTCTTCA CAAGTCCTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C57BL/6J	NZW/LacJ	SEA/GnJ	SWR/J
ss362944933	MGP_WTSI_4_115841756	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C57BL/6J	NZW/LacJ	SEA/GnJ	SWR/J
rs238519831					SNP	G	C	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362944933	MGP_WTSI_4_115841756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116026348 () rs orientation: forward

Symbol	Name	Function Class
Rr84349	regulatory region 84349	1148 bp distal
Rr84350	regulatory region 84350	748 bp distal
Rr84351	regulatory region 84351	within coordinates
Rr95993	regulatory region 95993	1033 bp proximal
Rr101863	regulatory region 101863	1148 bp distal
Rr101864	regulatory region 101864	within coordinates
Tspan1	tetraspanin 1	1550 bp upstream
Tssr42870	transcription start site region 42870	1572 bp upstream
Tssr42871	transcription start site region 42871	1544 bp upstream