rs238519833 SNP Detail

Summary

• ID
  rs238519833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117112482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGGTTCTG ATGGTGAGAT AGGAGATGGA
  AATACAGATA CCATACAGAA TCCCACAAAC ATtatatata tatattgcat attgcatata
  tgggatatat atatatatgt atatatatat atcacatatg ggatatatat atatatatat
  R
  tatatatata tatatatata tatatatata tatatatata tatatataca tTCCCATGAC
  AAAGTTTACT GCAGCAGAGT AAGAGCTTAA CAGCTGGTAA TGaattatta aattcaataa
  attaaaataa CTAAAATCTA AATACTGGAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323495154	CHEV_10_116713633	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238519833					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117112482 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	964 bp downstream
Rr439488	regulatory region 439488	679 bp distal
Tssr95904	transcription start site region 95904	752 bp upstream
Tssr95905	transcription start site region 95905	808 bp upstream
Tssr95906	transcription start site region 95906	870 bp upstream
Tssr95907	transcription start site region 95907	887 bp upstream
Tssr95908	transcription start site region 95908	1063 bp upstream
Tssr95909	transcription start site region 95909	1139 bp upstream
Tssr95910	transcription start site region 95910	1274 bp upstream
Tssr95911	transcription start site region 95911	1404 bp upstream
Tssr95912	transcription start site region 95912	1499 bp upstream
Tssr95913	transcription start site region 95913	1559 bp upstream
Tssr99410	transcription start site region 99410	853 bp downstream
Tssr99411	transcription start site region 99411	905 bp downstream
Tssr99412	transcription start site region 99412	1026 bp downstream
Tssr99413	transcription start site region 99413	1087 bp downstream
Tssr99414	transcription start site region 99414	1176 bp downstream
Tssr99415	transcription start site region 99415	1259 bp downstream
Tssr99416	transcription start site region 99416	1309 bp downstream
Tssr99417	transcription start site region 99417	1421 bp downstream
Tssr99418	transcription start site region 99418	1435 bp downstream
Tssr99419	transcription start site region 99419	1450 bp downstream
Tssr99420	transcription start site region 99420	1522 bp downstream
Tssr99421	transcription start site region 99421	1596 bp downstream