rs238521104 SNP Detail

Summary

• ID
  rs238521104
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105283002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTGACAT CAAGTGGAAA
  CAGTAAGCGT TTGGGAGACA AGAGGCTGAC AAGCAGGAAG CGCGATTGAG ACCCAGCTTT
  GTTCAGCCTG CAGTGAAATA CATGCAGTAA TAGTTAGATA CTCCCAGCAC AGACAGAAAT
  CCAAGCACCC TCCGAGACCA CTGGAACACG AGTAGGCGTC CCGAGAGGAT GAGAATGGGG
  R
  GTAGAAGACT GGTAAAACAG GGAAGGGTCA TTAAGGCTCT CCTGGATAAA TAATCACCTC
  CTGGCTCCTC TGCAGTCTAC GCCCCCCCTG CCGCGCCCCC AAGTTATCCC GCGGTAAAGC
  GGCTACCATC AACCGTAATG CCTCAGAAAT ATAGGAGTCA GGATGGAGAA TACCATCATC
  TTTTTAAGGC AAAATGCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350818397	MGP_WTSI_1_107251854	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238521104					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350818397	MGP_WTSI_1_107251854	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105283002 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	509 bp proximal
Gm17634	predicted gene, 17634	730 bp upstream
Rnf152	ring finger protein 152	within coordinates
Rr416387	regulatory region 416387	240 bp proximal
Rr416388	regulatory region 416388	741 bp proximal
Rr416389	regulatory region 416389	750 bp proximal
Rr416390	regulatory region 416390	1282 bp proximal
Rr416391	regulatory region 416391	1383 bp proximal
Rr416392	regulatory region 416392	1466 bp proximal
Tssr8255	transcription start site region 8255	1440 bp upstream
Tssr8256	transcription start site region 8256	1492 bp upstream
Tssr8257	transcription start site region 8257	1569 bp upstream
Tssr8258	transcription start site region 8258	1782 bp upstream
Tssr13126	transcription start site region 13126	1203 bp downstream
Tssr13127	transcription start site region 13127	1363 bp downstream
Tssr13128	transcription start site region 13128	1381 bp downstream
Tssr13129	transcription start site region 13129	1492 bp downstream
Tssr13130	transcription start site region 13130	1657 bp downstream