rs238522705 SNP Detail

Summary

• ID
  rs238522705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101830948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTAGAA GAAGAGCCAT
  CCTTCTCCTG CCTCAGTTTC CATAGTGCTA GGACTACAAG AATGAACCTC TTAAAGAGCC
  CAAGGACTCC TAAAATCAAG AGTTTTAGGT TGAGGTGTGC AGCTGGTTTC TGAGAATTCA
  ATACAATGAA CCACACTGTG TGGATGGTAT CATTTCCCTA GACCAAAGCT GGCCTCGGAG
  Y
  TTAATAACCC AGTAGAACTT TAACTAGAGA GAAATAAATT CCCGTGGATG GAAAGCCCCT
  TTAATAGGAA GCCTCCCTCA ATCTCAGAGA GGGCTGAAGG AGGCCATACT AGCTAGACCT
  GATCTTTTGT GGGCAGGTTG TCCATGCTTT CTCTGTCTCA CTCTGTAAGG GGTTAGGGTG
  CCGAATCCTT TTGATCCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359038965	MGP_WTSI_3_101727555	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238522705					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359038965	MGP_WTSI_3_101727555	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101830948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13622	CpG island 13622	128 bp proximal
Rr76960	regulatory region 76960	within coordinates
Slc22a15	solute carrier family 22 (organic anion/cation transporter), member 15	within coordinates
Tssr34811	transcription start site region 34811	564 bp downstream
Tssr34812	transcription start site region 34812	648 bp downstream
Tssr34813	transcription start site region 34813	746 bp downstream
Tssr34814	transcription start site region 34814	788 bp downstream
Tssr34815	transcription start site region 34815	836 bp downstream
Tssr34816	transcription start site region 34816	876 bp downstream
Tssr34817	transcription start site region 34817	892 bp downstream
Tssr34818	transcription start site region 34818	997 bp downstream