rs238527696 SNP Detail

Summary

• ID
  rs238527696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100574081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTGCTAT GGTGAGGCTA
  GAAACCTAAC CCCATGGCTT CACACAGGCT AAGCACACGC GTTTGCCACT TCCCCCTCCT
  TCTCTTCTTT TCTCTCCCAT CTCGCTCTTT CTTTAGACAG GGCCTTGAGG GGCCTGGAGA
  GTTGATCCAG TAGTTAAGGT CTTGCAGAGA ATCCAGGTTC TGTTCCCAGC ACCCACATGG
  Y
  GGGTTCCAAC TGTCTTAATT CTGGGTCAAG GGGATCTATG CCCTTCTCCG GCCTCTGCTG
  GTGCCAGGCA CACCCACAAT GCCACATTTA CTTTTAATTA AAAAAATTTT TTGAGGCATG
  AACCTCCATA CCTGGCTAAT TTAATTTTTA ATTTTTAATT TGGTGTATGT GCCTGAAGAG
  GCCAAAGAAA GTCTGATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325083834	CHEV_15_100506631	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238527696					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100574081 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Rr509795	regulatory region 509795	1786 bp distal
Rr509796	regulatory region 509796	742 bp proximal
Tssr4720	transcription start site region 4720	1733 bp upstream
Tssr4721	transcription start site region 4721	626 bp upstream
Tssr133153	transcription start site region 133153	1769 bp downstream
Tssr133154	transcription start site region 133154	1567 bp downstream
Tssr136461	transcription start site region 136461	1704 bp upstream
Tssr136462	transcription start site region 136462	1612 bp upstream
Tssr136463	transcription start site region 136463	1582 bp upstream
Tssr136464	transcription start site region 136464	1541 bp upstream
Tssr136465	transcription start site region 136465	1518 bp upstream
Tssr136466	transcription start site region 136466	1483 bp upstream
Tssr136467	transcription start site region 136467	1480 bp upstream
Tssr136468	transcription start site region 136468	838 bp upstream
Tssr136469	transcription start site region 136469	798 bp upstream
Tssr136470	transcription start site region 136470	786 bp upstream
Tssr136471	transcription start site region 136471	764 bp upstream
Tssr136472	transcription start site region 136472	753 bp upstream
Tssr136473	transcription start site region 136473	1884 bp downstream
Tssr136474	transcription start site region 136474	1914 bp downstream
Tssr136475	transcription start site region 136475	1973 bp downstream