rs238534657 SNP Detail

Summary

• ID
  rs238534657
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153443195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGGCGTGG CTCCAAGCAG ATGAAACTGA
  CTGCACACGT CCATGCTGGG TGAGGACAGA AGTGGCTAGA GCTTCCCTGA CGAATGAAGC
  TGTTGTGGAG CTGCTGAGAA TACCGAGAAG CCCTTGGACA GGTCGGAGGG CAGGAGAGCA
  K
  AAACAGGCCG GCCTCCCTCT TTCTGACTCA AAGCCACCCT TCCCTACAGC TGCATCTTCC
  CAGGAAGAGA CCAGCAGACT TCATCTAATG AAGCCCCAAA GAACCCGACC AAACACATTT
  TGCCGAGGGC CCAGAATTGA AACGCTGGCC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320564292	CHEV_2_153427011	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238534657					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153443195 () rs orientation: forward

Symbol	Name	Function Class
Gm75178	predicted gene, 75178	within coordinates
Rr567697	regulatory region 567697	83 bp distal
Rr567698	regulatory region 567698	within coordinates
Tssr20902	transcription start site region 20902	92 bp downstream