rs238538370 SNP Detail

Summary

• ID
  rs238538370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126862313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGCAGC TGCTCCCACC
  ACTCAACTAT GGCCGCTCCC TTAAAGGGAC CATGACGAAG GGATGATGTC AGAATGAAAG
  ATCTTAATGG AAGGACTATC TGGTGAAATG TCAGTGAGGG GTTCACATCA CCACCCTACA
  CCTGACTACA GAGATATTGC CAAAAGGAGA GAACCCTGAT GAGCCAAAGT TCTCAGTGAC
  Y
  CTATGAACAT GAAGAATCCC AACCAAGAAG AAAACAAGAC TGTTATCTGA AGGAGAAACC
  AACAGCTTGT CAAGTAAAGG GCGTCGACTC TCAAGGAACA ACTTCCAACC TTAAAACCAG
  ATCCACTGGT AGTGTTGAAG GCAGAACCAA TAACTGAAGA CAATTTCCTC AATACCTGCT
  TGCCATTAGA ATACTAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363166590	MGP_WTSI_4_126645764	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238538370					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363166590	MGP_WTSI_4_126645764	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126862313 () rs orientation: forward

Symbol	Name	Function Class
4933424C08Rik	RIKEN cDNA 4933424C08 gene	within coordinates
Cpgi14832	CpG island 14832	110 bp distal
Gm68857	predicted gene, 68857	within coordinates
Rr398497	regulatory region 398497	154 bp downstream
Rr599780	regulatory region 599780	396 bp distal
Rr599781	regulatory region 599781	310 bp distal
Rr599782	regulatory region 599782	within coordinates
Tssr39026	transcription start site region 39026	84 bp downstream
Tssr43405	transcription start site region 43405	521 bp upstream
Tssr43406	transcription start site region 43406	406 bp upstream
Tssr43407	transcription start site region 43407	366 bp upstream
Tssr43408	transcription start site region 43408	343 bp upstream
Tssr43409	transcription start site region 43409	322 bp upstream
Tssr43410	transcription start site region 43410	284 bp upstream
Tssr43411	transcription start site region 43411	323 bp downstream
Zmym4	zinc finger, MYM-type 4	385 bp upstream