rs238540490 SNP Detail

Summary

• ID
  rs238540490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115221291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGGCCA GCTGCGAAGA
  GCAGTGTGTA CAGCAGCTGC CCCCTTCCAG GTGACTCGGC AAAGTGAGAG TCGTCATCCA
  GCACAAGTTT GTTCTTTGGA AGGAAACACC CCAAGCAGAA GCCCTCATAA GAGGGTACCC
  CCCAAAGAGA AACACTCCTA GCATAGCTAC ACCCAATATA ACCATGCCCC AACATAGACA
  Y
  AGTCCCCAAC ACAGAAATAT CTGACACAGA ACTGTGAACC TGCAGGGACA GTCAGTCAGC
  CTCTGGGACT GTAGGTCCCA TGCCCCCAGG ATTTGCCCAA CCCTCAGACA GAAAATAACA
  GGAAAAAAAT CCGATCCTAT TGAACAGGAA TTTTTCCTTG TCATTATGCC CTAAGTAGAT
  CAAAGTACCA GCAATTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323862372	CHEV_11_115191779	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238540490					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115221291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4123	CpG island 4123	877 bp distal
Otop2	otopetrin 2	within coordinates
Rr459849	regulatory region 459849	919 bp distal