rs238542635 SNP Detail

Summary

• ID
  rs238542635
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95739021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTTTGA GACAGGGTTC
  CCCTGTATCC CAGACTGCCC TTGAGCTCAT TATAGAGCTA AGGATGGCTT TGAACTCTTG
  ATCCTTCTGC CTCTATACCC AAAGTAAGGG GATTGTAGGC ATGTGCAACT ATGCCTTCTT
  TTTTAAAATC GTTTAACTGT AGTTTGTTTA GTACTCTAGG TCCTCTGTGC CCGAGCCTCA
  Y
  GAGCTAGGTT AGTGCTCTTC CACTGGACTG TGCCCTCAGC TCTGTCATTA TTGTCATCTT
  TCTCAACATG ATTTCAAAAT AGCTAGCTTT TCTTGCTTTT TAGCAGATAC ACTATTTTTC
  ATAGTTGCCT GTCCTATGTT AGGTTTCTAT TGCTGTGATG GAACACAATG ATGGAAAGTG
  ACCTGGGAAG GAAAAGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323104512	CHEV_9_95757387	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238542635					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95739021 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	within coordinates
Atr	ataxia telangiectasia and Rad3 related	629 bp upstream
Cpgi22158	CpG island 22158	412 bp proximal
Rr206894	regulatory region 206894	within coordinates
Rr368834	regulatory region 368834	442 bp upstream
Rr401608	regulatory region 401608	1554 bp upstream
Tssr86577	transcription start site region 86577	660 bp upstream
Tssr86578	transcription start site region 86578	726 bp upstream
Tssr86579	transcription start site region 86579	976 bp upstream
Tssr90940	transcription start site region 90940	591 bp downstream
Tssr90941	transcription start site region 90941	896 bp downstream
Tssr90942	transcription start site region 90942	913 bp downstream