rs238547133 SNP Detail

Summary

• ID
  rs238547133
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43060363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGTCTG TCTCTGTGTG
  TATGTATTTG TCTGTCTGTC TGTCTCCGTC TTTGTGTCTA TCTCTATGTC TATAACCATC
  TCTCTCTCTC TCTACCTTCA TCCTTCCTCT GTTTCTCTGT CTCATTTTTG TCTGTTTCTC
  TCTTCATTCT TTTCTCTCTA TCACTGTCCA TCTCATCCTC TCTCTGCGGT GTGTGTCTCT
  Y
  TAGTCCCAGA CTTGCATGAG AATCCTTCAC ATCTGGAAGT TCAGCAAGGC CAGTCTCTTC
  GCCTCCTCTG TACTGCTGAC AGCCAGCCCC CTGCTACACT GAGCTGGGTC CTAGAGGACC
  AAGTCCTTTC TTGGTCTAGC CCTGTGGGGT CGAGAACCCT GGCACTAGAG CTGCCCTGGG
  TGAAAGCTGG GGACTCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322196854	CHEV_7_50666309	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238547133					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43060363 () rs orientation: forward

Symbol	Name	Function Class
Siglecg	sialic acid binding Ig-like lectin G	within coordinates
Tssr65991	transcription start site region 65991	1677 bp downstream
Tssr65992	transcription start site region 65992	1666 bp downstream
Tssr65993	transcription start site region 65993	1638 bp downstream
Tssr65994	transcription start site region 65994	1519 bp downstream