rs238549039 SNP Detail

Summary

• ID
  rs238549039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100719440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGCCGCTG GAGCTGCTGC TTGTGGTGCT
  AAGGACTAGA GAATGATGGG AAAATCCTac actgagtggc tgaagcaagg caagctccaa
  caactttgtt ttctccttca gctcgtttgt acccaaaagt ggtcaccaca aaacactttt
  R
  aaaaacatgt taaaatcact acacaaactg aaattacaac aggattactg cttgcatatc
  cttcttttgg aactttgacc taactctaca ttcctcatct gtctttctct ccacaagttc
  actgccaccc caaagcaata attctcttgt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325084576	CHEV_15_100651990	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238549039					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100719440 () rs orientation: forward

Symbol	Name	Function Class
Rr301632	regulatory region 301632	361 bp proximal
Rr308909	regulatory region 308909	822 bp proximal
Rr312513	regulatory region 312513	within coordinates
Slc4a8	solute carrier family 4 (anion exchanger), member 8	within coordinates
Tssr4723	transcription start site region 4723	1956 bp downstream