rs238555147 SNP Detail

Summary

• ID
  rs238555147
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109738748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCACAAG GTAAGTGCTA
  TTCCAAAAAT AGTTGCCCCA GCAAACTCTA TTGCTTAAAA CTTGCAATTA AGTTTACTGA
  CAGAAAGCCC AGTGTACAGA ATTACATACT ATAGGAACAG CAGAACAAAC AGGAGAAGAA
  GAGAAAAACT AGGTCAGAGG TCAGAAAACA CACCTACAGG CATGGTACGC GGTAGTCAGC
  R
  TTCCTCAGAG TCTGAGGTTG TTGCACGGAC AGTGGACACA CAGAAATCCT GGGAGCAGAT
  GATTTCTCAT GCAAGCAGGA CAGCAGACAG ACAAATGTGA AAGCCATCAT GCAAAGGCAG
  TTAACTTTGA AAATGGCGCC CAGCGCTGAG ATTCCGAATA AATCGGACTC TTACCATCTG
  AGACTGACTT CTCGGACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458394	CHEV_10_109339943	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238555147					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109738748 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr224236	regulatory region 224236	852 bp proximal
Tssr99236	transcription start site region 99236	927 bp downstream
Tssr99237	transcription start site region 99237	943 bp downstream
Tssr99238	transcription start site region 99238	965 bp downstream
Tssr99239	transcription start site region 99239	988 bp downstream
Tssr99240	transcription start site region 99240	1024 bp downstream
Tssr99241	transcription start site region 99241	1065 bp downstream
Tssr99242	transcription start site region 99242	1125 bp downstream