rs238556691 SNP Detail

Summary

• ID
  rs238556691
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52151906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAAGCTAA AGGCTCTGCA TTCTATTGTC
  AATGTTGGAG AAAGCCAAGA GAATTTTAAA ATGTAAGAGT GGTGGTATAA AGTTTGTTTC
  TTCATTATAT CTGTTTTTGC TCAAATGAAA ATATAACAAG GACTCTTTTG AAAAGAACTT
  S
  CCACCCCTGC AATTCCTCTG CATGGAATGG CTTCTACAGG GCAGGCCATT TAGGGACTTT
  GTTTTTGAGT TCCCTGAATG ACTGTTGCTT CAAAATTCTT AGTTGggggc tggagagatg
  gctcagtggt taagggcact gactgctctt                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319719436	CHEV_1_52169591	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238556691					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52151906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi240	CpG island 240	773 bp proximal
Gm28177	predicted gene 28177	within coordinates
Gm31812	predicted gene, 31812	within coordinates
Rr366897	regulatory region 366897	within coordinates
Rr410805	regulatory region 410805	140 bp proximal
Rr410806	regulatory region 410806	994 bp proximal