rs238558940 SNP Detail

Summary

• ID
  rs238558940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120240848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGCCTA CAGGAGCTAA
  CAGCTAACTA ACACTTGTAG GTGGGGGTGA GAGTCGTGGG GAAAGTGGAA GGTTTCGGTG
  AGCACTCACA CCTCTGACAC GCCCATGGCT ACCCAAGAAG TACTGCCGGG GGCCTGGCCC
  TCAAATCCGA GCCTTCTCTT AAGACGCCTT TGTCTGCTTG TGTGCAGAAG GCGCTGCGAG
  Y
  ACGGAACGGC CATGTAAGGC CGGGTTCCCC CGGCGGGGGC GCCTTGTCCC GCCGCGGGAC
  CAAGGTGCAA CTCAGGTGTG CGGGTGGGGG CAGGGGCGGC GGGCGGCGCG CGGCCATATT
  TGGCGATTTC GACCCGCGCT CCGCCCGCCG CCGGGAGGCC AGTGGCCGCC CTGAGTCACG
  GGGGCGGACG TAACGGACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384941885	MGP_WTSI_11_120211336	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238558940					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384941885	MGP_WTSI_11_120211336	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120240848 () rs orientation: forward

Symbol	Name	Function Class
0610009L18Rik	RIKEN cDNA 0610009L18 gene	within coordinates
Actg1	actin, gamma, cytoplasmic 1	1527 bp upstream
Cpgi4301	CpG island 4301	within coordinates
Gm72337	predicted gene, 72337	within coordinates
Tssr3756	transcription start site region 3756	732 bp downstream
Tssr3757	transcription start site region 3757	249 bp upstream
Tssr106280	transcription start site region 106280	1240 bp downstream
Tssr112288	transcription start site region 112288	1833 bp upstream
Tssr112289	transcription start site region 112289	1777 bp upstream
Tssr112290	transcription start site region 112290	1514 bp upstream
Tssr112291	transcription start site region 112291	1463 bp upstream
Tssr112292	transcription start site region 112292	1231 bp upstream
Tssr112293	transcription start site region 112293	595 bp upstream
Tssr112294	transcription start site region 112294	160 bp upstream