rs238563603 SNP Detail

Summary

• ID
  rs238563603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9069951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTTGCC TGTAAGCGAT
  TCCCAGGGCC TGCCATTGTT GATCTCTCTT TCAGCTTGTG CAGTTTGTGC CCCATCTGCA
  TTTTGGGCTA AACCACCCCC ACTTCTCAGC CAGTCAGCTA TTGTTTCTTT TTCCTTCTTC
  AGAGGCCAAG CAGACCTTCT GGTCTCCGTA GAACCCTCAT TACCGCACGT ATCTTTAATG
  Y
  GCTTCTTGGG CACAAATTGT AATCTCAGTC TTCTATACTT TCAGCTCTGG TAAGCAGTCG
  GCGCTTTAGG TTTTAGGTTT TTTTTTTTTT TTTTTTTTTT TTTTTTACTT TGGCAGTTTG
  TAAAAAATGT ACTTTGTGGT GCATTTACTG ATTATAGGAA TCTTAAAAAT CTATCTTAAT
  AAAAAAATTA TTTGTAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382361462	MGP_WTSI_11_9019954	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238563603					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382361462	MGP_WTSI_11_9019954	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9069951 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2578	CpG island 2578	511 bp distal
Rr385585	regulatory region 385585	1887 bp downstream
Rr442636	regulatory region 442636	1434 bp distal
Rr442637	regulatory region 442637	within coordinates
Tssr3423	transcription start site region 3423	1818 bp downstream
Tssr3424	transcription start site region 3424	1810 bp downstream
Tssr100322	transcription start site region 100322	1961 bp downstream
Tssr100323	transcription start site region 100323	1934 bp downstream
Tssr100324	transcription start site region 100324	1860 bp downstream
Tssr100325	transcription start site region 100325	1395 bp downstream
Tssr100326	transcription start site region 100326	1358 bp downstream
Tssr100327	transcription start site region 100327	1317 bp downstream
Tssr100328	transcription start site region 100328	721 bp downstream
Tssr100329	transcription start site region 100329	655 bp downstream
Tssr100330	transcription start site region 100330	105 bp upstream
Upp1	uridine phosphorylase 1	within coordinates