rs238564808 SNP Detail

Summary

• ID
  rs238564808
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:47740714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCCTTT TTTTAAAAGG
  GGGGGAGGGA GTGTTTAAAT ATCCTCTAAG CCATAATGCA GGCAGGCCCA GGCGAACCTG
  GTATTGCGGG CAACCCTGGA CTAAGGCTCG CCTTTCACAA AGCTCAGGGA AGGCTGCAGC
  CATCCTATCT CCCTGCAGAC CAGATGCTCA GCTCAATCCC CCTCCCCGAT TTTTACCTAA
  M
  GAATAGCTCT CCAACCCCAT ATTGAGAGGG CCTGCTGTGG ATCTTACAGA GGTACAAAAT
  GGTGGATGGG AGCTAATTTT TCCCTGCTCT CCCCATACAT AACTCGGCAC ATCCATCACC
  GCAGGTCCTC CTCTACCCCA AACCCTCAAC TAGCCGCGGC GCAGCAATCA CAGGCGGCGG
  CTGAACCGTG CTTTACCAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374556863	MGP_WTSI_8_48373033	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238564808					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374556863	MGP_WTSI_8_48373033	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47740714 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20325	CpG island 20325			217 bp distal
Cpgi20326	CpG island 20326			within coordinates
Rr663191	regulatory region 663191			1558 bp distal
Rr663192	regulatory region 663192			670 bp proximal
Rr663193	regulatory region 663193			1673 bp proximal
Stox2	storkhead box 2			Intron
				mRNA-UTR
Tssr2563	transcription start site region 2563			1961 bp downstream
Tssr77334	transcription start site region 77334			724 bp upstream
Tssr81223	transcription start site region 81223			451 bp downstream
Tssr81224	transcription start site region 81224			605 bp downstream
Tssr81225	transcription start site region 81225			768 bp downstream
Tssr81226	transcription start site region 81226			1644 bp downstream
Tssr81227	transcription start site region 81227			1675 bp downstream
Tssr81228	transcription start site region 81228			1715 bp downstream
Tssr81229	transcription start site region 81229			1734 bp downstream