rs238566945 SNP Detail

Summary

• ID
  rs238566945
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117550970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACTAAAC CACCAGCCAA
  AGAGCATACA GAAAGGAGCC AGAACTCTAG ACACATAAAA AGCAGAGGAT GGAACTCACT
  TATCTGACAT CAGTGGGAGG GGAGGGAGGC TTGATGCCCG GCATGGGGGA TGCTAGAGCC
  ACGTGAGGCA GGAGTGGGTA AGTGGGTGGC GGAGCACCCC CATAGAGGCA AAGGAGAGGA
  K
  GAAGAAGGGG GATTGGATTG AGAGATTGTG GAGGGGTAAC TGGGAAGGGG GATATCATTT
  AAAATGTAAA TGAATAAAAA GATTAATTAA AAAAAAAAAG TCTCTGTTTC CCAGGGATGA
  AAGATAGGGC TTCTCAGAGG GAGCCACTGA CAGCAGGCTG TCAATCATTG GGGGCTTTGA
  CAAAGTGAGG GTAAGGCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323498918	CHEV_10_117152121	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238566945					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117550970 () rs orientation: forward

Symbol	Name	Function Class
Gm66624	predicted gene, 66624	898 bp downstream
Gm67727	predicted gene, 67727	1331 bp upstream
Rr212986	regulatory region 212986	970 bp distal
Rr212987	regulatory region 212987	631 bp proximal
Rr225986	regulatory region 225986	832 bp proximal
Rr385358	regulatory region 385358	1931 bp upstream
Tssr99470	transcription start site region 99470	173 bp downstream