rs238572850 SNP Detail

Summary

• ID
  rs238572850
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31121956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAGAAATA TTTACACATT CTGTAGAAAT
  GAATTCACTC TGAGCCGGGT TTTTAATTAG AACATTCTCA GGTCATGCCT ATTTTATCAA
  ACGCAATCTC TGACACTGGC TCAACGTACA GAAAGCCACG GTGGGTTTTT TTTTTTTTTT
  W
  AATACAAGCA GGCGCAAGAA GAAATAAACA ACACCAGAAA CACACAGTCC AGTCCTACAG
  TTCAAGCATT ATTTCGAGAA AGTAAGTAAA AATAAAGTCC CATGTCTCCC TAGGCGACAG
  AGGGTTCTTG CGGGGAGGCT AGGTGCAGAG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889593	CHEV_9_31018245	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238572850					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31121956 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Cpgi21527	CpG island 21527	100 bp proximal
Gm69111	predicted gene, 69111	1364 bp upstream
Rr206148	regulatory region 206148	within coordinates
Rr401293	regulatory region 401293	1062 bp upstream
Tssr84218	transcription start site region 84218	674 bp upstream
Tssr88644	transcription start site region 88644	1046 bp upstream
Tssr88645	transcription start site region 88645	1145 bp downstream