rs238576575 SNP Detail

Summary

• ID
  rs238576575
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67471872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAACCCCG GGAATGAATC
  TGTAGGGTCT CCCGCAGGCG ACAAAAAACC TGCATCTAGA GGCAAATCCG CGCTGGCTTC
  CTGCTCCCGC GATCGGAAAG AACCATCATG ATCCTAACTC TCAGAGTCCT GCTACTCTGT
  TTTGGTGCAG GATTTGGGGA CCCCCTTTCC CACTCAGGCC AAACACTCGG GACTCTGGTC
  R
  GGACTCGGTG CTTGTGGCTT GCTGTAGCCT TTCACCTCCC GGACTTCGGG CAAAGCAAAG
  CTTGGCTAAC GCCGCGGGAG GACGTCCGCC CAGCTTGCCC AGAGCCGGCC AATCCCGGGC
  GTCCATGCAA ATGAGGCTCC TTATCGGGCC TCGGCTCCGC CTCCCGCGGC CTGGGTTGTA
  GTAACCATTC ATGGGGCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391397588	MGP_WTSI_14_67853260	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238576575					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391397588	MGP_WTSI_14_67853260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67471872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6658	CpG island 6658	570 bp distal
Cpgi6659	CpG island 6659	within coordinates
Cpgi6660	CpG island 6660	477 bp proximal
Ebf2	early B cell factor 2	within coordinates
Gm20675	predicted gene 20675	1294 bp upstream
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	1215 bp downstream
Tssr126328	transcription start site region 126328	1077 bp downstream
Tssr126329	transcription start site region 126329	967 bp downstream
Tssr126330	transcription start site region 126330	513 bp downstream
Tssr126331	transcription start site region 126331	165 bp upstream
Tssr126332	transcription start site region 126332	197 bp upstream
Tssr126333	transcription start site region 126333	308 bp upstream
Tssr126334	transcription start site region 126334	372 bp upstream
Tssr126335	transcription start site region 126335	422 bp upstream