rs238583253 SNP Detail

Summary

• ID
  rs238583253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79490293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAGAAGT GGTACATGGA
  CGTACGCATA GGCAAAGCAC CCACACACAG AAAATAAATT TGTTCTTTTT TTTTTTTTTT
  TTTTTTTGGT TTTTCGAGAC AGGGTTTCTC TGTATAGCTC TGGCTGTCCT GGAACCAGGC
  TGGCCTCGAA CTCAGAAATC TGCCTGCCTC TGCCTCCCAA GTGCTGGAAT TAAAGGCGTG
  Y
  ACCACCACGC CCTGCCAATA AATTTGTTCT AAATTAAAAG CAAGGCACCA TTCGTGGTGG
  CACACAACTT TAATCTCGGC ATTGAGGAAC AGAGACAAGT GGGTGTCTGT GAGTTTGAGG
  CCAGCCTGTT CTACAGAGCA AGGTTCAGGA CAGACGTTCC TCAATTTTAC ACCTGAGAAA
  CTGTCTAGAA AGCAAAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032924	MGP_WTSI_7_86985431	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238583253					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032924	MGP_WTSI_7_86985431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79490293 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Gm71751	predicted gene, 71751	1874 bp upstream
Tssr67371	transcription start site region 67371	1284 bp upstream
Tssr67372	transcription start site region 67372	1472 bp upstream
Tssr67373	transcription start site region 67373	1932 bp upstream
Tssr67374	transcription start site region 67374	1978 bp upstream
Tssr73155	transcription start site region 73155	1853 bp upstream
Tssr73156	transcription start site region 73156	1789 bp upstream
Tssr73157	transcription start site region 73157	1591 bp upstream
Tssr73158	transcription start site region 73158	1341 bp upstream
Tssr73159	transcription start site region 73159	1291 bp upstream
Tssr73160	transcription start site region 73160	1047 bp upstream
Tssr73161	transcription start site region 73161	358 bp downstream
Tssr73162	transcription start site region 73162	375 bp downstream
Tssr73163	transcription start site region 73163	434 bp downstream
Tssr73164	transcription start site region 73164	579 bp downstream
Tssr73165	transcription start site region 73165	1140 bp downstream
Tssr73166	transcription start site region 73166	1181 bp downstream
Tssr73167	transcription start site region 73167	1389 bp downstream
Tssr73168	transcription start site region 73168	1401 bp downstream
Tssr73169	transcription start site region 73169	1429 bp downstream
Tssr73170	transcription start site region 73170	1460 bp downstream
Tssr73171	transcription start site region 73171	1531 bp downstream
Tssr73172	transcription start site region 73172	1559 bp downstream
Tssr73173	transcription start site region 73173	1575 bp downstream
Tssr73174	transcription start site region 73174	1663 bp downstream
Tssr73175	transcription start site region 73175	1684 bp downstream
Tssr73176	transcription start site region 73176	1742 bp downstream
Tssr73177	transcription start site region 73177	1772 bp downstream
Tssr73178	transcription start site region 73178	1798 bp downstream
Tssr73179	transcription start site region 73179	1862 bp downstream
Tssr73180	transcription start site region 73180	1929 bp downstream