rs238586588 SNP Detail

Summary

• ID
  rs238586588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184582450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTTGGCT TCAGGCAAGC
  TCCCTGCATC CCAGACCTGC TGCAGGCAGG ATGCTGGCAT TAGTCTGTAA CAGTGACCGT
  ACAGTCTACC TCACAGGCCC TAGTTTTAAA CTGGAAGCAT TAGTAAACAT GATGCTAATT
  TTTAATAATT TACTTATTTT TATTTTGTGT ACTCTTGTGT TTTGCCTGCT TGTATGAGGG
  Y
  ATCAGATCCC CTGAAACTGG AGTTATAGAC AGTGGTGAGC TGCCATGTGG GTGCTGGGAA
  TTGAACCTGG GTCCTCCTGG AGAGCCGCCA GTGCTCTTAT CCTCTGAGTC ATCTCTCCAG
  ACTCCTACAA TGCTAATTTT TAAAAAGATT TATTTTATGT ATATGAGTAC ATGGTAGCTG
  TACAGATGGC TGTGAGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169897	CHEV_1_186674132	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238586588					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184582450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1164	CpG island 1164	1691 bp proximal
Gm34451	predicted gene, 34451	within coordinates
Rr372580	regulatory region 372580	223 bp downstream
Rr425307	regulatory region 425307	865 bp proximal