rs238587003 SNP Detail

Summary

• ID
  rs238587003
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13335860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTATGAA AAATGCCTCA
  TAAACCAAAC ATTTACAGAC AAATTAAGAG AGCGTCAAGT CCATCCGTGT GTGAAATCCA
  TGCTAAGGTC TGCTCAGGCA AGTGACTTTC ATTAGAGCTT CCCTTGTCAC GGAAGCCAAA
  GCATTGGGGG CATTTTCTCT TCCATTATTC TAGTGTTTAA AATGCATAGG ACTTTAAAAA
  M
  CGTATGTAAT TTGTGTGTAT GTGTCCCAAC GTGTGTGTGT GTGGAGATCA GAAAACAACT
  GTATTGTCGG TCCTCTTTAC CCACCATTTG GATTGTACTT GACGGTAGCT ACCTTTACCT
  GTAAAGCCAT CCCACTGGCC CCAAAATGAA AAAATCCTCA ACTAACACTG GACAGTCCAG
  TTGACCTCAA GAATTGGTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505813	CHEV_8_13285860	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238587003					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13335860 () rs orientation: forward

Symbol	Name	Function Class
9530085L11Rik	RIKEN cDNA 9530085L11 gene	within coordinates
Cpgi20111	CpG island 20111	1218 bp proximal
Dcun1d2	defective in cullin neddylation 1 domain containing 2	within coordinates
Rr659903	regulatory region 659903	1020 bp proximal
Rr659904	regulatory region 659904	1540 bp proximal
Rr659905	regulatory region 659905	1963 bp proximal
Tssr80437	transcription start site region 80437	1954 bp downstream