rs238596444 SNP Detail

Summary

• ID
  rs238596444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122700658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCCACAG AGGTCTTACA
  GATCCGGGGA AAGCACCCTC TCTGGGGTCT AGAACCTTCT TTTAAAAGAC AGAAGCCAAC
  TTCTCCAGTG CCCAACACAA TGTAACTAAA GCCTGTGGAC CGTGTGTGAG TCGGTGCGTG
  AAGATATGTA AATGAAGTGT TGAGTGAGGA CAAATGTGCA AGGGAGGTCG TGGTGTCACA
  Y
  GAGTGTGTGC ACGAGGTCAG GAATGTATGA ATTAGTATGA GAGTGTATGT CAGACCTCGA
  GTGAAAAGCT AGAGTTTCCT AGGGTCCCAG GTCTCTCCCT CAGACCTTCC TCAACCGGCC
  CCAGGACCTC TCTTCACGGG TGAGGCCGCT CTGACCAGCC TACAAAACAT AGCCAAACCC
  ATGCGCCCCT CCCACGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392821458	MGP_WTSI_14_122862468	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238596444					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392821458	MGP_WTSI_14_122862468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122700658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6894	CpG island 6894	within coordinates
Gm56762	predicted gene, 56762	300 bp upstream
Rr498402	regulatory region 498402	1191 bp distal
Rr498403	regulatory region 498403	within coordinates
Rr498404	regulatory region 498404	342 bp proximal
Rr498405	regulatory region 498405	1178 bp proximal
Tssr127333	transcription start site region 127333	901 bp upstream
Tssr127334	transcription start site region 127334	1710 bp upstream
Tssr130332	transcription start site region 130332	1624 bp upstream
Tssr130333	transcription start site region 130333	917 bp downstream
Tssr130334	transcription start site region 130334	967 bp downstream
Tssr130335	transcription start site region 130335	980 bp downstream
Tssr130336	transcription start site region 130336	1573 bp downstream
Zic5	zinc finger protein of the cerebellum 5	within coordinates