rs238599364 SNP Detail

Summary

• ID
  rs238599364
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57530535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGGAATC CAGAGAGAGA
  GGCACGGTGG TTCCCAGAGC TGCCCAGGTT GGGGTGCTCA CAACAGGGTC TGTGATGGTT
  AATACTGCTG GACAGCTTGA TAGTGTCTAA AATCAGTCAG GCGATGAGCG CTGGCCATGC
  CGGTGAGGGG GGTTTTAGAT TAGGTTGAAC GTGTGGGTGG CACGGTTCTC CCCTGAGATA
  W
  TGGACTGGAC TGAATAAAAA GGAGGAAGTG AACTAAACAC TCAGTGCTCA TTCATCTTTG
  CTGGTAGGGT GTGAAAAAGA TGCCGTATGC TCCTGCTGCT GTGCCTGCCA GCCACGCAGG
  ACAGTCACCT CCCACTGTGA GCTGTGGTAT ACATTCCTTC CTTAAGTGGC TTTTGCCAGG
  TGTTTTATTA CAGCAATGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398573175	MGP_WTSI_17_57362958	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238599364					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398573175	MGP_WTSI_17_57362958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57530535 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	787 bp proximal
Tssr145377	transcription start site region 145377	1304 bp downstream
Tssr145378	transcription start site region 145378	400 bp downstream
Tssr145379	transcription start site region 145379	325 bp downstream
Tssr145380	transcription start site region 145380	280 bp downstream
Tssr145381	transcription start site region 145381	226 bp downstream
Tssr145382	transcription start site region 145382	283 bp upstream
Tssr145383	transcription start site region 145383	399 bp upstream
Tssr145384	transcription start site region 145384	532 bp upstream
Tssr145385	transcription start site region 145385	1714 bp upstream
Tssr148939	transcription start site region 148939	1606 bp upstream
Tssr148940	transcription start site region 148940	1262 bp upstream
Tssr148941	transcription start site region 148941	1189 bp upstream
Tssr148942	transcription start site region 148942	689 bp upstream
Tssr148943	transcription start site region 148943	649 bp upstream
Tssr148944	transcription start site region 148944	635 bp upstream
Tssr148945	transcription start site region 148945	598 bp upstream
Tssr148946	transcription start site region 148946	586 bp upstream
Tssr148947	transcription start site region 148947	336 bp upstream
Tssr148948	transcription start site region 148948	252 bp upstream
Tssr148949	transcription start site region 148949	196 bp upstream
Tssr148950	transcription start site region 148950	320 bp downstream
Tssr148951	transcription start site region 148951	361 bp downstream
Tssr148952	transcription start site region 148952	402 bp downstream
Tssr148953	transcription start site region 148953	586 bp downstream
Tssr148954	transcription start site region 148954	637 bp downstream
Tssr148955	transcription start site region 148955	784 bp downstream
Tssr148956	transcription start site region 148956	817 bp downstream
Tssr148957	transcription start site region 148957	1345 bp downstream
Tssr148958	transcription start site region 148958	1568 bp downstream
Tssr148959	transcription start site region 148959	1728 bp downstream